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Today's Topics:
1. Re: Error while compiling Moses (Christophe Servan)
2. Re: error during testing (Hieu Hoang)
----------------------------------------------------------------------
Message: 1
Date: Fri, 20 Dec 2013 10:21:08 +0100
From: Christophe Servan <christophe.servan@gmail.com>
Subject: Re: [Moses-support] Error while compiling Moses
To: nakul sharma <nakul777@gmail.com>
Cc: moses-support@mit.edu
Message-ID:
<CAAsGDkoErX5guxFUT4Cg=pqOre+_yJGQfoN4OdAjK9-W+0Tuxw@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
Dear Nakul,
did you install the bzip2 library (i.e. the package bzip2-dev) ?
Best,
Christophe
2013/12/20 nakul sharma <nakul777@gmail.com>
> Hi,
>
> I am trying to compile moses. But I am getting following error messages.
> Please help in this regard.
>
> notice: found boost-build.jam at /usr/share/boost-build/boost-build.jam
> notice: loading Boost.Build from /usr/share/boost-build/kernel
> notice: Searching /etc /home/nakul /usr/share/boost-build/kernel
> /usr/share/boost-build /usr/share/boost-build/kernel
> /usr/share/boost-build/util /usr/share/boost-build/build
> /usr/share/boost-build/tools /usr/share/boost-build/contrib
> /usr/share/boost-build/. for site-config configuration file site-config.jam
> .
> notice: Configuration file site-config.jam not found in /etc /home/nakul
> /usr/share/boost-build/kernel /usr/share/boost-build
> /usr/share/boost-build/kernel /usr/share/boost-build/util
> /usr/share/boost-build/build /usr/share/boost-build/tools
> /usr/share/boost-build/contrib /usr/share/boost-build/. .
> notice: Searching /home/nakul /usr/share/boost-build/kernel
> /usr/share/boost-build /usr/share/boost-build/kernel
> /usr/share/boost-build/util /usr/share/boost-build/build
> /usr/share/boost-build/tools /usr/share/boost-build/contrib
> /usr/share/boost-build/. for user-config configuration file user-config.jam
> .
> notice: Configuration file user-config.jam not found in /home/nakul
> /usr/share/boost-build/kernel /usr/share/boost-build
> /usr/share/boost-build/kernel /usr/share/boost-build/util
> /usr/share/boost-build/build /usr/share/boost-build/tools
> /usr/share/boost-build/contrib /usr/share/boost-build/. .
>
> file /home/nakul/mosesdecoder-master/previous.sh
> #!/bin/sh
> /usr/bin/bjam -j2 --debug-configuration -d2
>
>
> bash -c "g++ -lSegFault -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -static -lSegFault -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 1
> bash -c "g++ -lboost_program_options-1_46_1 -x c++ - <<<'int main() {}'
> -o /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 1
> bash -c "g++ -static -lboost_program_options -x c++ - <<<'int main() {}'
> -o /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_system-mt -static -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_thread-mt -static -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_program_options-mt -static -x c++ - <<<'int main()
> {}' -o /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_unit_test_framework-mt
> -DBOOST_TEST_MODULE=CompileTest -include boost/test/unit_test.hpp -static
> -x c++ - <<<'BOOST_AUTO_TEST_CASE(foo) {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_iostreams-mt -static -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -lboost_filesystem-mt -static -x c++ - <<<'int main() {}'
> -o /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -static -lz -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 0
> bash -c "g++ -ltcmalloc_minimal -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 1
> Tip: install tcmalloc for faster threading. See BUILD-INSTRUCTIONS.txt
> for more information.
> warning: No toolsets are configured.
> warning: Configuring default toolset "gcc".
> warning: If the default is wrong, your build may not work correctly.
> warning: Use the "toolset=xxxxx" option to override our guess.
> warning: For more configuration options, please consult
> warning:
> http://boost.org/boost-build2/doc/html/bbv2/advanced/configuration.html
> notice: will use 'g++' for gcc, condition <toolset>gcc-4.6
> notice: using gcc libraries :: <toolset>gcc-4.6 :: /usr/bin /usr/lib
> /usr/lib32 /usr/lib64
> notice: using gcc archiver :: <toolset>gcc-4.6 :: /usr/bin/ar
> notice: using gcc ranlib :: <toolset>gcc-4.6 :: /usr/bin/ranlib
> warning: toolset gcc initialization: can not find tool windres
> warning: initialized from
> notice: using rc compiler :: <toolset>gcc-4.6 :: /usr/bin/as
> bash -c "g++ -lbz2 -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 1
> bash -c "g++ -llzma -x c++ - <<<'int main() {}' -o
> /home/nakul/mosesdecoder-master/dummy >/dev/null 2>/dev/null && rm
> /home/nakul/mosesdecoder-master/dummy 2>/dev/null"
> 1
> ...patience...
> ...found 3439 targets...
> ...updating 4 targets...
> gcc.link
> moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/moses
>
> "g++" -o
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/moses"
> -Wl,--start-group
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/Main.o"
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/IOWrapper.o"
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/mbr.o"
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/LatticeMBR.o"
> "moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/TranslationAnalysis.o"
> "moses/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/libmoses.a"
> -Wl,-Bstatic -lz -lboost_filesystem-mt -lboost_iostreams-mt
> -lboost_thread-mt -lboost_system-mt -lz -Wl,-Bdynamic -lrt -ldl -lSegFault
> -lrt -Wl,--end-group -g -pthread
>
>
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::do_init(bool, void*
> (*)(void*, int, int), void (*)(void*, void*), void*)':
> (.text+0x2e9): undefined reference to `BZ2_bzDecompressInit'
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::do_init(bool, void*
> (*)(void*, int, int), void (*)(void*, void*), void*)':
> (.text+0x391): undefined reference to `BZ2_bzCompressInit'
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::end(bool)':
> (.text+0x455): undefined reference to `BZ2_bzDecompressEnd'
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::end(bool)':
> (.text+0x4d1): undefined reference to `BZ2_bzCompressEnd'
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::compress(int)':
> (.text+0x18c): undefined reference to `BZ2_bzCompress'
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/libboost_iostreams-mt.a(bzip2.o):
> In function `boost::iostreams::detail::bzip2_base::decompress()':
> (.text+0x19c): undefined reference to `BZ2_bzDecompress'
> collect2: ld returned 1 exit status
> ...failed gcc.link
> moses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/moses...
> ...skipped <p/home/nakul/mosesdecoder-master/bin>moses for lack of
> <pmoses-cmd/bin/gcc-4.6/release/debug-symbols-on/link-static/threading-multi>moses...
> testing.capture-output
> moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.run
>
>
> LD_LIBRARY_PATH="/usr/bin:/usr/lib:/usr/lib32:/usr/lib64:$LD_LIBRARY_PATH"
> export LD_LIBRARY_PATH
>
>
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest"
> "moses/LM/backward.arpa" >
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.output"
> 2>&1
> status=$?
> echo >>
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.output"
> echo EXIT STATUS: $status >>
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.output"
> if test $status -eq 0 ; then
> cp
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.output"
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.run"
> fi
> verbose=0
> if test $status -ne 0 ; then
> verbose=1
> fi
> if test $verbose -eq 1 ; then
> echo ====== BEGIN OUTPUT ======
> cat
> "moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.output"
> echo ====== END OUTPUT ======
> fi
> exit $status
>
> ====== BEGIN OUTPUT ======
> Running 1 test case...
> moses/LM/BackwardTest.cpp(162): error in "ProbingAll": difference{100%}
> between static_cast<double>(TransformLMScore( 0.0 )){0} and
> static_cast<double>(ngramScore){1.3724476843890443e-07} exceeds 0.01%
>
> *** 1 failure detected in test suite "BackwardTest"
>
> EXIT STATUS: 201
> ====== END OUTPUT ======
> ...failed testing.capture-output
> moses/LM/bin/BackwardTest.test/gcc-4.6/release/debug-symbols-on/link-static/threading-multi/BackwardTest.run...
> ...failed updating 2 targets...
> ...skipped 2 targets...
> The build failed with command line:
> /usr/bin/bjam -j2 --debug-configuration -d2
> If you need support, attach the full output to your e-mail.
> ERROR
>
> --
> Thanks & Regards,
> Nakul Sharma
>
>
>
> _______________________________________________
> Moses-support mailing list
> Moses-support@mit.edu
> http://mailman.mit.edu/mailman/listinfo/moses-support
>
>
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------------------------------
Message: 2
Date: Fri, 20 Dec 2013 15:01:00 +0000
From: Hieu Hoang <hieuhoang@gmail.com>
Subject: Re: [Moses-support] error during testing
To: moses-support@mit.edu
Message-ID: <52B45BAC.1000203@gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
there shouldn't be a problem with compiling moses on current gcc.
What is the gcc version? What OS, distribution, extact version are you
running? Can you please make your models available for download via
Dropbox or Google Drive. I will try to replicate and fix the problem.
On 20/12/2013 07:36, amir haghighi wrote:
>
> Dear Hieu
>
> I got the latest code but the problem is not solved yet. It still
> gives the segmentation fault error ~x(.
> Is there any other way to solve this problem except downgrading gcc?
>
> Regards
> Amir
>
>
>
>
>
> On Wed, Dec 18, 2013 at 8:22 PM, Hieu Hoang <Hieu.Hoang@ed.ac.uk
> <mailto:Hieu.Hoang@ed.ac.uk>> wrote:
>
> ah, that's good. However, if you get the latest Moses code by doing
> git pull
> you shouldn't get the problem. It was fixed on the 15th November
> https://github.com/moses-smt/mosesdecoder/commit/17887a27969e83f4100bd0f4af98986e33999fbe
>
>
>
>
>
>
> _______________________________________________
> Moses-support mailing list
> Moses-support@mit.edu
> http://mailman.mit.edu/mailman/listinfo/moses-support
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